PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g030980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 248aa    MW: 26593.5 Da    PI: 8.3977
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g030980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-0594116123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k+Fs+   L  H  +H
  Csa03g030980.1  94 YKCTVCDKTFSSYQALGGHKASH 116
                     9***********99999998887 PP

2zf-C2H210.80.0015152171120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C++C+ksF++   L  H 
  Csa03g030980.1 152 HVCSICNKSFPSGQALGGHK 171
                     79*********988776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.6E-494117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.23E-994116No hitNo description
PROSITE profilePS5015710.13894121IPR007087Zinc finger, C2H2
SMARTSM003550.003294116IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-1394118IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-9147174No hitNo description
PROSITE profilePS501579.473152179IPR007087Zinc finger, C2H2
SMARTSM003550.033152174IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-13152176IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM  60
LLARDGDRKH HQPPPPLLPA AAVTADKTME KLSYKCTVCD KTFSSYQALG GHKASHRKNL  120
SQTHSGGGGG DDQSTSSATT TSAVTTGSGK SHVCSICNKS FPSGQALGGH KRCHYEGNNN  180
NSTNNNSSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS TVNGDDEVMS PMPAKKPRFD  240
FPVKLQL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0123751e-148AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence.
GenBankAF2503361e-148AF250336.1 Arabidopsis thaliana zinc finger protein STZ/ZAT10 (STZ/ZAT10) mRNA, complete cds.
GenBankAY0349981e-148AY034998.1 Arabidopsis thaliana putative salt-tolerance zinc finger protein (At1g27730) mRNA, complete cds.
GenBankAY0630061e-148AY063006.1 Arabidopsis thaliana putative salt-tolerance zinc finger protein (At1g27730) mRNA, complete cds.
GenBankCP0026841e-148CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankX955731e-148X95573.1 A.thaliana mRNA for salt-tolerance zinc finger protein.
GenBankX986701e-148X98670.1 A.thaliana mRNA for ZAT10 protein.
GenBankX986711e-148X98671.1 A.thaliana zat10 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499266.10.0PREDICTED: zinc finger protein ZAT10
SwissprotQ962891e-140ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLR0GRN81e-145R0GRN8_9BRAS; Uncharacterized protein
STRINGAT1G27730.11e-138(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-110salt tolerance zinc finger